Fig. 2
From: High level of genomic divergence in orf-I p12 and hbz genes of HTLV-1 subtype-C in Central Australia
Proviral genomic deletions revealed from de novo assembly of Central Australian HTLV-1c genomic sequences. Linear map representation of de novo assembly of the 22 novel Central Australian HTLV-1c sequences (P9-31) in purple aligned to the consensus sequence. The consensus sequence of the Cosmopolitan HTLV-1a provirus generated from 11 previously published genomes (AB513134.1, AB979451.1, AF033817.1, AF042071.1, AF139170.1, HQ606137.1, HQ606138.1, KC807984.1, L03562.2, L36905.1, U19949.1), aligned in green. The major HTLV-1 genomic features are shown for the HTLV-1c consensus sequence (Gag, Pro, Pol, Env, pX, and LTRs). Red lines represent single nucleotide polymorphisms, white, represents gaps or deletions. Lines above the genome alignment represent insertions